Make Website Google Friendly And Configure Plugins Correctly

I have received the following message from Google for my website: We've reviewed your site and we believe that some or all of your pages still violate our Quality Guidelines. In order to preserve the quality of our search engine, pages from http://xxxxxxx may not appear or may not rank as highly in Google's search results, or may otherwise be considered to be less trustworthy than sites which follow the Quality Guidelines. If you wish to be reconsidered, please correct or remove all pages that are outside our Quality Guidelines. When such changes have been made, please visit [login to view URL] and submit your site for reconsideration. If you have additional questions about how to resolve this issue, please see our Webmaster Help Forum for support. Yours sincerely, Google Search Quality Team In addition to the above, there are some runtime errors when loading certain pages within the site. The Google issue is down to the way the affiliate links are placed, with popups happening all over the place. Affiliate links need to be no follow links. Broken links need to be fixed. This mail above clearly elaborates the on-page issues with the website. I need to rectify all issues on the website. The out going links or pop up links need to be put in a way that Google does not consider them. The affiliate links are a source of income and rather than redirecting to there website we can open them inside iframe within our own website pages. Currently too many pop ups are present on one page which is not recommended. For each pop up we can create new page which will host the pop up inside iframe, within the website URL. Or any other suggestion you can recommend. Also, if anyone has any experience of making the website even better by recommending plugins or structure of the site to improve traffic, working within the existing theme or developing a new theme and transferring content, I am open to suggestions. When applying, please include your Skype username, I will be conducting interviews over Skype before making a decision.